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標題: | 182位置酪胺酸的磷酸化降低Rad23蛋白與泛素的結合能力及其所參與的蛋白質降解途徑 Phosphorylation of Tyrosine-182 decreases the ubiquitin binding ability and Rad23-mediated protein degradation |
作者: | 陳柏蓉 Bo-RongChen |
關鍵字: | Rad23;磷酸化;phosphorylation | 出版社: | 生物醫學研究所 | 引用: | Aboussekhra, A., Biggerstaff, M., Shivji, M.K., Vilpo, J.A., Moncollin, V., Podust, V.N., Protic, M., Hubscher, U., Egly, J.M., and Wood, R.D. (1995). Mammalian DNA nucleotide excision repair reconstituted with purified protein components. Cell 80, 859-868. Aguilar, R.C., and Wendland, B. (2003). Ubiquitin: not just for proteasomes anymore. Curr Opin Cell Biol 15, 184-190. Batty, D.P., and Wood, R.D. (2000). Damage recognition in nucleotide excision repair of DNA. Gene 241, 193-204. Baumeister, W., Walz, J., Zuhl, F., and Seemuller, E. (1998). The proteasome: paradigm of a self-compartmentalizing protease. Cell 92, 367-380. Bertolaet, B.L., Clarke, D.J., Wolff, M., Watson, M.H., Henze, M., Divita, G., and Reed, S.I. (2001). UBA domains of DNA damage-inducible proteins interact with ubiquitin. Nat Struct Biol 8, 417-422. Biggins, S., Ivanovska, I., and Rose, M.D. (1996). Yeast ubiquitin-like genes are involved in duplication of the microtubule organizing center. J Cell Biol 133, 1331-1346. Branzei, D., and Foiani, M. (2006). The Rad53 signal transduction pathway: Replication fork stabilization, DNA repair, and adaptation. Exp Cell Res 312, 2654-2659. Buchberger, A. (2002). From UBA to UBX: new words in the ubiquitin vocabulary. Trends Cell Biol 12, 216-221. Chen, L., and Madura, K. (2002). Rad23 promotes the targeting of proteolytic substrates to the proteasome. Mol Cell Biol 22, 4902-4913. Chen, L., Shinde, U., Ortolan, T.G., and Madura, K. (2001). Ubiquitin-associated (UBA) domains in Rad23 bind ubiquitin and promote inhibition of multi-ubiquitin chain assembly. EMBO Rep 2, 933-938. Clarke, D.J., Mondesert, G., Segal, M., Bertolaet, B.L., Jensen, S., Wolff, M., Henze, M., and Reed, S.I. (2001). Dosage suppressors of pds1 implicate ubiquitin-associated domains in checkpoint control. Mol Cell Biol 21, 1997-2007. Coux, O., Tanaka, K., and Goldberg, A.L. (1996). Structure and functions of the 20S and 26S proteasomes. Annu Rev Biochem 65, 801-847. de Laat, W.L., Jaspers, N.G., and Hoeijmakers, J.H. (1999). Molecular mechanism of nucleotide excision repair. Genes Dev 13, 768-785. Diaz-Martinez, L.A., Kang, Y., Walters, K.J., and Clarke, D.J. (2006). Yeast UBL-UBA proteins have partially redundant functions in cell cycle control. Cell Div 1, 28. Elsasser, S., Chandler-Militello, D., Muller, B., Hanna, J., and Finley, D. (2004). Rad23 and Rpn10 serve as alternative ubiquitin receptors for the proteasome. J Biol Chem 279, 26817-26822. Elsasser, S., Gali, R.R., Schwickart, M., Larsen, C.N., Leggett, D.S., Muller, B., Feng, M.T., Tubing, F., Dittmar, G.A., and Finley, D. (2002). Proteasome subunit Rpn1 binds ubiquitin-like protein domains. Nat Cell Biol 4, 725-730. Friedberg, E.C. (2001). How nucleotide excision repair protects against cancer. Nat Rev Cancer 1, 22-33. Funakoshi, M., Sasaki, T., Nishimoto, T., and Kobayashi, H. (2002). Budding yeast Dsk2p is a polyubiquitin-binding protein that can interact with the proteasome. Proc Natl Acad Sci U S A 99, 745-750. Ghaboosi, N., and Deshaies, R.J. (2007). A conditional yeast E1 mutant blocks the ubiquitin-proteasome pathway and reveals a role for ubiquitin conjugates in targeting Rad23 to the proteasome. Mol Biol Cell 18, 1953-1963. Gillette, T.G., Huang, W., Russell, S.J., Reed, S.H., Johnston, S.A., and Friedberg, E.C. (2001). The 19S complex of the proteasome regulates nucleotide excision repair in yeast. Genes Dev 15, 1528-1539. Gillette, T.G., Yu, S., Zhou, Z., Waters, R., Johnston, S.A., and Reed, S.H. (2006). Distinct functions of the ubiquitin-proteasome pathway influence nucleotide excision repair. EMBO J 25, 2529-2538. Glickman, M.H., Rubin, D.M., Coux, O., Wefes, I., Pfeifer, G., Cjeka, Z., Baumeister, W., Fried, V.A., and Finley, D. (1998). A subcomplex of the proteasome regulatory particle required for ubiquitin-conjugate degradation and related to the COP9-signalosome and eIF3. Cell 94, 615-623. Goh, A.M., Walters, K.J., Elsasser, S., Verma, R., Deshaies, R.J., Finley, D., and Howley, P.M. (2008). Components of the ubiquitin-proteasome pathway compete for surfaces on Rad23 family proteins. BMC Biochem 9, 4. Gorbea, C., Taillandier, D., and Rechsteiner, M. (1999). Assembly of the regulatory complex of the 26S proteasome. Mol Biol Rep 26, 15-19. Gragerov, A., Kino, T., Ilyina-Gragerova, G., Chrousos, G.P., and Pavlakis, G.N. (1998). HHR23A, the human homologue of the yeast repair protein RAD23, interacts specifically with Vpr protein and prevents cell cycle arrest but not the transcriptional effects of Vpr. Virology 245, 323-330. Guzder, S.N., Bailly, V., Sung, P., Prakash, L., and Prakash, S. (1995). Yeast DNA repair protein RAD23 promotes complex formation between transcription factor TFIIH and DNA damage recognition factor RAD14. J Biol Chem 270, 8385-8388. Guzder, S.N., Sung, P., Prakash, L., and Prakash, S. (1998). Affinity of yeast nucleotide excision repair factor 2, consisting of the Rad4 and Rad23 proteins, for ultraviolet damaged DNA. J Biol Chem 273, 31541-31546. Heessen, S., Masucci, M.G., and Dantuma, N.P. (2005). The UBA2 domain functions as an intrinsic stabilization signal that protects Rad23 from proteasomal degradation. Mol Cell 18, 225-235. Hershko, A. (2005). The ubiquitin system for protein degradation and some of its roles in the control of the cell division cycle. Cell Death Differ 12, 1191-1197. Hershko, A., and Ciechanover, A. (1998). The ubiquitin system. Annu Rev Biochem 67, 425-479. Hiyama, H., Yokoi, M., Masutani, C., Sugasawa, K., Maekawa, T., Tanaka, K., Hoeijmakers, J.H., and Hanaoka, F. (1999). Interaction of hHR23 with S5a. The ubiquitin-like domain of hHR23 mediates interaction with S5a subunit of 26 S proteasome. J Biol Chem 274, 28019-28025. Hofmann, K., and Bucher, P. (1996). The UBA domain: a sequence motif present in multiple enzyme classes of the ubiquitination pathway. Trends Biochem Sci 21, 172-173. Hwang, G.W., Sasaki, D., and Naganuma, A. (2005). Overexpression of Rad23 confers resistance to methylmercury in saccharomyces cerevisiae via inhibition of the degradation of ubiquitinated proteins. Mol Pharmacol 68, 1074-1078. Jansen, L.E., Verhage, R.A., and Brouwer, J. (1998). Preferential binding of yeast Rad4.Rad23 complex to damaged DNA. J Biol Chem 273, 33111-33114. Kang, Y., Vossler, R.A., Diaz-Martinez, L.A., Winter, N.S., Clarke, D.J., and Walters, K.J. (2006). UBL/UBA ubiquitin receptor proteins bind a common tetraubiquitin chain. J Mol Biol 356, 1027-1035. Kaur, M., Pop, M., Shi, D., Brignone, C., and Grossman, S.R. (2007). hHR23B is required for genotoxic-specific activation of p53 and apoptosis. Oncogene 26, 1231-1237. Koegl, M., Hoppe, T., Schlenker, S., Ulrich, H.D., Mayer, T.U., and Jentsch, S. (1999). A novel ubiquitination factor, E4, is involved in multiubiquitin chain assembly. Cell 96, 635-644. Lommel, L., Chen, L., Madura, K., and Sweder, K. (2000). The 26S proteasome negatively regulates the level of overall genomic nucleotide excision repair. Nucleic Acids Res 28, 4839-4845. Lommel, L., Ortolan, T., Chen, L., Madura, K., and Sweder, K.S. (2002). Proteolysis of a nucleotide excision repair protein by the 26 S proteasome. Curr Genet 42, 9-20. Madura, K. (2002). The ubiquitin-associated (UBA) domain: on the path from prudence to prurience. Cell Cycle 1, 235-244. Masutani, C., Sugasawa, K., Yanagisawa, J., Sonoyama, T., Ui, M., Enomoto, T., Takio, K., Tanaka, K., van der Spek, P.J., Bootsma, D., et al. (1994). Purification and cloning of a nucleotide excision repair complex involving the xeroderma pigmentosum group C protein and a human homologue of yeast RAD23. EMBO J 13, 1831-1843. Miao, F., Bouziane, M., Dammann, R., Masutani, C., Hanaoka, F., Pfeifer, G., and O''Connor, T.R. (2000). 3-Methyladenine-DNA glycosylase (MPG protein) interacts with human RAD23 proteins. J Biol Chem 275, 28433-28438. Miller, R.D., Prakash, L., and Prakash, S. (1982). Defective excision of pyrimidine dimers and interstrand DNA crosslinks in rad7 and rad23 mutants of Saccharomyces cerevisiae. Mol Gen Genet 188, 235-239. Mueller, J.P., and Smerdon, M.J. (1996). Rad23 is required for transcription-coupled repair and efficient overrall repair in Saccharomyces cerevisiae. Mol Cell Biol 16, 2361-2368. Ng, J.M., Vermeulen, W., van der Horst, G.T., Bergink, S., Sugasawa, K., Vrieling, H., and Hoeijmakers, J.H. (2003). A novel regulation mechanism of DNA repair by damage-induced and RAD23-dependent stabilization of xeroderma pigmentosum group C protein. Genes Dev 17, 1630-1645. Ohno, A., Jee, J., Fujiwara, K., Tenno, T., Goda, N., Tochio, H., Kobayashi, H., Hiroaki, H., and Shirakawa, M. (2005). Structure of the UBA domain of Dsk2p in complex with ubiquitin molecular determinants for ubiquitin recognition. Structure 13, 521-532. Ortolan, T.G., Chen, L., Tongaonkar, P., and Madura, K. (2004). Rad23 stabilizes Rad4 from degradation by the Ub/proteasome pathway. Nucleic Acids Res 32, 6490-6500. Ortolan, T.G., Tongaonkar, P., Lambertson, D., Chen, L., Schauber, C., and Madura, K. (2000). The DNA repair protein rad23 is a negative regulator of multi-ubiquitin chain assembly. Nat Cell Biol 2, 601-608. Pickart, C.M. (1997). Targeting of substrates to the 26S proteasome. FASEB J 11, 1055-1066. Raasi, S., Varadan, R., Fushman, D., and Pickart, C.M. (2005). Diverse polyubiquitin interaction properties of ubiquitin-associated domains. Nat Struct Mol Biol 12, 708-714. Rao, H., and Sastry, A. (2002). Recognition of specific ubiquitin conjugates is important for the proteolytic functions of the ubiquitin-associated domain proteins Dsk2 and Rad23. J Biol Chem 277, 11691-11695. Roos-Mattjus, P., and Sistonen, L. (2004). The ubiquitin-proteasome pathway. Ann Med 36, 285-295. Russell, S.J., Reed, S.H., Huang, W., Friedberg, E.C., and Johnston, S.A. (1999). The 19S regulatory complex of the proteasome functions independently of proteolysis in nucleotide excision repair. Mol Cell 3, 687-695. Ryu, K.S., Lee, K.J., Bae, S.H., Kim, B.K., Kim, K.A., and Choi, B.S. (2003). Binding surface mapping of intra- and interdomain interactions among hHR23B, ubiquitin, and polyubiquitin binding site 2 of S5a. J Biol Chem 278, 36621-36627. Saeki, Y., Saitoh, A., Toh-e, A., and Yokosawa, H. (2002a). Ubiquitin-like proteins and Rpn10 play cooperative roles in ubiquitin-dependent proteolysis. Biochem Biophys Res Commun 293, 986-992. Saeki, Y., Sone, T., Toh-e, A., and Yokosawa, H. (2002b). Identification of ubiquitin-like protein-binding subunits of the 26S proteasome. Biochem Biophys Res Commun 296, 813-819. Schauber, C., Chen, L., Tongaonkar, P., Vega, I., Lambertson, D., Potts, W., and Madura, K. (1998). Rad23 links DNA repair to the ubiquitin/proteasome pathway. Nature 391, 715-718. Seeger, M., Ferrell, K., and Dubiel, W. (1997). The 26S proteasome: a dynamic structure. Mol Biol Rep 24, 83-88. van der Spek, P.J., Visser, C.E., Hanaoka, F., Smit, B., Hagemeijer, A., Bootsma, D., and Hoeijmakers, J.H. (1996). Cloning, comparative mapping, and RNA expression of the mouse homologues of the Saccharomyces cerevisiae nucleotide excision repair gene RAD23. Genomics 31, 20-27. Verma, R., Aravind, L., Oania, R., McDonald, W.H., Yates, J.R., 3rd, Koonin, E.V., and Deshaies, R.J. (2002). Role of Rpn11 metalloprotease in deubiquitination and degradation by the 26S proteasome. Science 298, 611-615. Verma, R., Oania, R., Graumann, J., and Deshaies, R.J. (2004). Multiubiquitin chain receptors define a layer of substrate selectivity in the ubiquitin-proteasome system. Cell 118, 99-110. Walters, K.J., Lech, P.J., Goh, A.M., Wang, Q., and Howley, P.M. (2003). DNA-repair protein hHR23a alters its protein structure upon binding proteasomal subunit S5a. Proc Natl Acad Sci U S A 100, 12694-12699. Wang, Z., Wei, S., Reed, S.H., Wu, X., Svejstrup, J.Q., Feaver, W.J., Kornberg, R.D., and Friedberg, E.C. (1997). The RAD7, RAD16, and RAD23 genes of Saccharomyces cerevisiae: requirement for transcription-independent nucleotide excision repair in vitro and interactions between the gene products. Mol Cell Biol 17, 635-643. Wang, Z., Wu, X., and Friedberg, E.C. (1993). Nucleotide-excision repair of DNA in cell-free extracts of the yeast Saccharomyces cerevisiae. Proc Natl Acad Sci U S A 90, 4907-4911. Watkins, J.F., Sung, P., Prakash, L., and Prakash, S. (1993). The Saccharomyces cerevisiae DNA repair gene RAD23 encodes a nuclear protein containing a ubiquitin-like domain required for biological function. Mol Cell Biol 13, 7757-7765. Weissman, A.M. (2001). Themes and variations on ubiquitylation. Nat Rev Mol Cell Biol 2, 169-178. Wilkinson, C.R., Seeger, M., Hartmann-Petersen, R., Stone, M., Wallace, M., Semple, C., and Gordon, C. (2001). Proteins containing the UBA domain are able to bind to multi-ubiquitin chains. Nat Cell Biol 3, 939-943. Wilkinson, K.D. (2000). Ubiquitination and deubiquitination: targeting of proteins for degradation by the proteasome. Semin Cell Dev Biol 11, 141-148. Xie, Z., Liu, S., Zhang, Y., and Wang, Z. (2004). Roles of Rad23 protein in yeast nucleotide excision repair. Nucleic Acids Res 32, 5981-5990. Zhu, Q., Wani, G., Wani, M.A., and Wani, A.A. (2001). Human homologue of yeast Rad23 protein A interacts with p300/cyclic AMP-responsive element binding (CREB)-binding protein to down-regulate transcriptional activity of p53. Cancer Res 61, 64-70. | 摘要: | Rad23為一個從酵母菌到人類間具高度保留性的蛋白,其參與於細胞內的核甘酸修補機制及泛素系統所主導的蛋白質降解途徑;然而,目前細胞是透過何種機制調控Rad23參與於這些功能仍然未知。為了研究細胞內訊號對Rad23功能的調控,利用定位點突變技術及體外激酉每試驗證明182位置的酪胺酸在物種間具高度保留性且可以被激酉每Rad53磷酸化,Y182F/D的突變不影響Rad23蛋白自身的穩定度。在功能的影響分析上發現Y182F/D的突變株不影響細胞對UV的敏感性及Rad23與Rad4的結合能力;但Y182D的突變顯著地降低了Rad23與K48及K63連接型的聚泛素鏈的結合力及些微地降低了Rad23與26S蛋白水解酉每複合體間的結合。而經由UFD途徑降解的Ub-Pro-β-gal,在高度表現Rad23及Y182F的突變株中的穩定度大為增加,但在表現Y182D的突變株中則觀察不到此情形。此外,Y182D的突變降低了Rad23形成同型雙體的能力。基於觀察到的結果,推測182位置酪胺酸的磷酸化降低Rad23蛋白與泛素的結合能力及其所參與的蛋白質降解途徑;但其作用的分子機轉仍需進一步的研究探討。 Rad23 is evolutionarily conserved for involving in DNA nuclear excision repair (NER) and ubiquitin-proteasome system (UPS) from yeast to human. However, the signaling regulation of Rad23 function is still unknown. To investigate the signaling control for Rad23 function, site-directed mutagenesis and in vitro kinase assay were used to prove Tyrosine-182, the highly conserved residue in UBA1 domain among species, is phosphotylated by Rad53. Y182F/D mutants didn't affect the stability of Rad23 itself. Functional analysis showed that Y182F/D mutants were similar to wild-type in UV sensitivity and Rad4 binding affinity. Interestingly, Y182D mutant significantly reduced the K48- and K63-linked polyubiquitin chain binding ability in vitro and in vivo and slightly decreased the association with 26S subunits. Ub-Pro-βgal, a substrate of the ubiquitin-fusion degradation pathway, was significantly stabilized in strains that over-expressed wild-type Rad23 and Rad23Y182F, but not Y182D mutant. Furthermore, the lower dimerization was observed in wild-type /Rad23Y182D and Rad23Y182D/ Rad23Y182D. Based on these results, we suggest that the ubiquitin chain binding ability of Rad23 might be down-regulated through the phosphorylation of Y182 on UBA1 domain, which consequently affect the Rad23-mediated proteolysis. However, the molecular mechanism for Y182 phosphorylation by signaling will be further investigated. |
URI: | http://hdl.handle.net/11455/20118 | 其他識別: | U0005-2606200814313700 |
Appears in Collections: | 生物醫學研究所 |
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