Please use this identifier to cite or link to this item:
http://hdl.handle.net/11455/20145
DC Field | Value | Language |
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dc.contributor | 楊泮池 | zh_TW |
dc.contributor | 洪澤民 | zh_TW |
dc.contributor | 陳惠文 | zh_TW |
dc.contributor | 俞松良 | zh_TW |
dc.contributor.advisor | 陳健尉 | zh_TW |
dc.contributor.author | 陳建宏 | zh_TW |
dc.contributor.author | Chen, Chien-Hung | en_US |
dc.contributor.other | 中興大學 | zh_TW |
dc.date | 2012 | zh_TW |
dc.date.accessioned | 2014-06-06T07:11:56Z | - |
dc.date.available | 2014-06-06T07:11:56Z | - |
dc.identifier | U0005-2601201100175900 | zh_TW |
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"NonO, a non-POU-domain-containing, octamer-binding protein, is the mammalian homolog of Drosophila nonAdiss." Mol Cell Biol 13(9): 5593-5603. Zhang, Z. and G. G. Carmichael (2001). "The fate of dsRNA in the nucleus: a p54(nrb)-containing complex mediates the nuclear retention of promiscuously A-to-I edited RNAs." Cell 106(4): 465-475. Zhu, B. Q., C. Heeschen, et al. (2003). "Second hand smoke stimulates tumor angiogenesis and growth." Cancer Cell 4(3): 191-196. | en_US |
dc.identifier.uri | http://hdl.handle.net/11455/20145 | - |
dc.description.abstract | p54nrb/NonO is a multiple function nuclear protein. It has been implicated in numerous processes within the nucleus including transcriptional regulation, DNA unwinding, nuclear RNA processing, DNA double-strand break repair and tumorigenesis. In vivo, p54nrb usually forms a heterodimer with its partner PSF as a RNA splicing factor, but its roles in tumor progress is unknown. In recent years, p54nrb has been report in bladder cancer and prostate cancer that different expression of p54nrb between normal tissue and tumor tissue. p54nrb is upregulated in bladder cancer and prostate cancer. However, the mechanism about transcriptional regulation of p54nrb is still unknown. In this study, we characterize p54nrb function in non-small cell lung cancer cell (NSCLC) line and the transcriptional regulation of p54nrb promoter. First we find p54nrb transcription start site and use PCR technology to clone -1671/+1261 ( 2952 bp ) p54nrb promoter. Then we analyzed p54nrb promoter region by deletion of p54nrb promoter 5' end and luciferase report assay. The results of luciferase assay demonstrated that there is an important regulation region in p54nrb promoter +311/+414 fragment. And deletion of p54nrb promoter +109/+203 region can cause a part of luciferase activity decreasing. Furthermore, we used programe to predict what kind of transcription factor binding site on these two p54nrb promoter region. And we found three CCAAT box and AP-1, AP2α, Sp1, PEA3, NF-1, YY1 binding site. To investigate which transcription factors involve in transcriptional regulation of p54nrb. We observed the change of p54nrb after overexpressed AP-1, AP2α and Sp1 in CL1-0, CL1-5 and A549 cell line. But , the protein level and mRNA level of p54nrb don't change after overexpressed AP-1, AP2α and Sp1. On the other hand, our previous data showed that enforced p54nrb expression can suppress CL1-5 migration and invasion. In this study, we silenced p54nrb with siRNA and investigated the effect of migration and invasion. The result showed that there is no effect on migration and invasion after p54nrb silence. And so far, we still try to establish p54nrb silence stable clone. | en_US |
dc.description.abstract | p54nrb(Non-POU domain containing, octamer-bindin)在前人研究即被指出是一個多功能的核蛋白,參與多種細胞調節作用。其中包含轉錄調節、DNA的解旋、RNA修飾機制、雙股DNA修復與腫瘤新生。細胞內的p54nrb會與PSF形成複合體,並參與 pre-mature RNA的剪接作用,但p54nrb在癌症內所扮演的角色目前還不是很清楚。近幾年有研究指出,其中有研究指出在膀胱癌與前列腺癌的腫瘤組織與正常組織的p54nrb蛋白質表現量有明顯差異,腫瘤組織的p54nrb表現量會高於正常組織。然而目前對於p54nrb基因表現調控的機制還不是很清楚。本篇研究主要目的為定義出p54nrb基因在非小細胞肺癌之上游調控轉錄的區域,並分析可能的轉錄因子參與調控。首先我們找出p54nrb的轉錄起始位置,並利用聚合酶連鎖反應合成p54nrb啟動子-1671/+1261區域。接著利用5’缺失構築與冷光報導基因分析,結果發現p54nrb啟動子+311/+414區域為一段相當重要調控轉錄活性的區域,此外p54nrb啟動子+109/+203區域缺失也會造成部分啟動子的活性下降。進一步利用程式分析這兩個p54nrb啟動子片段,發現此區域具有三個CCAAT box與AP-1、AP2α、Sp1、PEA3、NF-1、YY1等轉錄因子結合位。為了進一步了解哪個轉錄因子可能參與到p54nrb基因的轉錄調控,我們將AP-1、AP2α、Sp1轉錄因子大量表現在CL1-0、CL1-5、A549肺癌細胞株,並觀察其對p54nrb基因表現的調控。根據實驗結果發現p54nrb的蛋白質與mRNA的表現量,在大量表現AP-1、AP2α、Sp1細胞中沒有明顯的差異。另外在實驗室先前的研究中發現大量表現p54nrb於CL1-5細胞株,會抑制其移動能力與侵襲能力。在本篇研究中,我們以siRNA將CL1-0、CL1-5細胞中的p54nrb靜默並觀察對細胞移動能力與侵襲能力的影響,結果發現在靜默p54nrb後對CL1-0、CL1-5細胞的移動能力與侵襲能力沒有顯著的影響。目前我們仍致力於挑選穩定靜默p54nrb的細胞株。 | zh_TW |
dc.description.tableofcontents | 中文摘要 i Abstract ii 目次 iii 圖與附圖目次 vii 第一章 序論 1 第一節 前人研究 1 一、肺癌 1 二、啟動子 (Promoter) 7 三、轉錄因子 (transcription factor) 8 四、轉錄作用 9 五、轉錄調節 12 六、p54nrb 13 七、p54nrb與癌症 15 第二節 研究目的與策略架構 16 第二章 材料與方法 18 第一節 細胞株(cell line)及細胞培養(cell culture) 18 第二節 細胞冷凍保存及解凍(cell cryopreservation and recovery) 18 第三節 細胞蛋白質之萃取(protein extraction) 19 第四節 蛋白質定量 (protein amount assay) 19 第五節 蛋白質凝膠電泳分析 ( SDS-polyacrylamide gel electro-phoresis,SDS-PAGE ) 20 第六節 西方墨點法(western blot) 20 第七節 細胞RNA萃取(RNA extraction) 21 第八節 RNA電泳 22 第九節 反轉錄聚合酶反應 ( RT-PCR ) 23 第十節 DNA片段回收(gel purification and DNA clean-up) 24 第十一節 接合反應 (ligation reaction) 24 第十二節 勝任細胞置備 (preparation of component cell) 24 第十三節 轉型作用 ( transformation ) 25 第十四節 細菌質體DNA萃取 25 第十五節 菌種甘油保存法 (storage in glycerol) 26 第十六節 菌落聚合酶連鎖反應 (colony PCR) 26 第十七節 大量質體萃取 (plasmid purification) 27 第十八節 轉染作用 (transfection) 28 第十九節 穩定表現細胞株加藥篩選 (stable cell line) 28 第二十節 細胞基質侵襲力分析 ( matrigel invasion assay ) 29 第二十一節 細胞遷移分析 ( migration assay ) 29 第二十二節 冷光報導基因之構築 30 第二十三節 冷光報導基因分析 (Luciferase reporter gene assay) 30 第二十四節 5'' rapid amplification of cDNA ends (5'' RACE) 31 第二十五節 DNA 片段標定 Biotin 31 第二十六節 DNA 結合蛋白沉降分析 (DNA-binding protein pull down assay) 32 第二十七節 銀染 32 第三章 實驗結果 33 第一節 利用5’ RACE方法確認p54nrb轉錄起始位置 33 第二節 以生物資訊學方法與RT-PCR方法確認p54nrb轉錄起始位置 33 第三節 構築p54nrb啟動子5’端每400 bp缺失片段於pGL3-basic載體,利用冷光報導基因方法分析p54nrb啟動子調控區域 34 第四節 p54nrb啟動子主要活性調控區域為(+311/+415)片段 35 第五節 以生物資訊學方法分析調控p54nrb啟動子活性區域 36 第六節 p54nrb啟動子(+311/+414)區域為核心啟動子(core promoter) 36 第七節 利用DNA binding protein pull down assay觀察哪些轉錄因子會結合至p54nrb啟動子(+311/+414)區域 37 第八節 分析大量表現AP-1、AP2α、Sp1轉錄因子對p54nrb啟動子的轉錄活性之影響 37 第九節 大量表現JunD轉錄因子會抑制pSV-β-galactosidase轉錄活性 38 第十節 以renilla luciferase當作internal control分析大量表現AP-1、AP2α、Sp1轉錄因子對p54nrb啟動子的轉錄活性之影響 39 第十一節 大量表現AP-1家族蛋白、AP2α、Sp1轉錄因子對p54nrb蛋白質表現量的影響 40 第十二節 大量表現AP-1家族蛋白、AP2、Sp1轉錄因子對p54nrb mRNA表現量的影響 40 第十三節 細胞在培養密度差異十倍條件下會影響p54nrb蛋白表現量 41 第十四節 觀察細胞在培養密度差異十倍條件下對p54nrb mRNA表現量之影響 41 第十五節 觀察細胞在培養密度差異十倍條件下對p54nrb 蛋白穩定性之影響 41 第十六節 大量表現p54nrb對於CL1-5細胞侵襲能力之影響 42 第十七節 大量表現p54nrb對於CL1-5細胞移動能力之影響 42 第十八節 以西方墨點法與即時定量聚合酶連鎖反應確認大量表現p54nrb細胞株的蛋白質與mRNA表現量 43 第十九節 測試p54nrb siRNA之靜默效果 43 第二十節 靜默p54nrb對CL1-0、CL1-5侵襲能力與移動能力之影響 44 第二十一節 篩選穩定靜默p54nrb之CL1-0細胞株 44 第四章 討論 46 第五章 結論 52 參考文獻 53 實驗結果圖表 58 附表 88 附錄 97 | zh_TW |
dc.language.iso | en_US | zh_TW |
dc.publisher | 生物醫學研究所 | zh_TW |
dc.relation.uri | http://www.airitilibrary.com/Publication/alDetailedMesh1?DocID=U0005-2601201100175900 | en_US |
dc.subject | lung cancer | en_US |
dc.subject | 肺癌 | zh_TW |
dc.title | 探討p54nrb基因在非小細胞肺癌之上游調控區域 | zh_TW |
dc.title | Characterization of p54nrb/NonO promoter in NSCLC | en_US |
dc.type | Thesis and Dissertation | zh_TW |
item.openairetype | Thesis and Dissertation | - |
item.openairecristype | http://purl.org/coar/resource_type/c_18cf | - |
item.languageiso639-1 | en_US | - |
item.grantfulltext | none | - |
item.fulltext | no fulltext | - |
item.cerifentitytype | Publications | - |
Appears in Collections: | 生物醫學研究所 |
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