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標題: Functional characterization of cellulases identified from the cow rumen fungus Neocallimastix patriciarum W5 by transcriptomic and secretomic analyses
作者: Wang, T.Y.
Chen, H.L.
Lu, M.Y.J.
Chen, Y.C.
Sung, H.M.
Mao, C.T.
Cho, H.Y.
Ke, H.M.
Hwa, T.Y.
Ruan, S.K.
Hung, K.Y.
Chen, C.K.
Li, J.Y.
Wu, Y.C.
Chen, Y.H.
Chou, S.P.
Tsai, Y.W.
Chu, T.C.
Shih, C.C.A.
Li, W.H.
Shih, M.C.
關鍵字: anaerobic fungi;biomass;rice straw;sugarcane;napiergrass;GH;next-generation sequencing;anaerobic fungi;xylanolytic enzymes;glycoside hydrolase;escherichia-coli;xylanase gene;frontalis;purification;expression;cloning;cellobiohydrolase
Project: Biotechnology for Biofuels
期刊/報告no:: Biotechnology for Biofuels, Volume 4.
Background: Neocallimastix patriciarum is one of the common anaerobic fungi in the digestive tracts of ruminants that can actively digest cellulosic materials, and its cellulases have great potential for hydrolyzing cellulosic feedstocks. Due to the difficulty in culture and lack of a genome database, it is not easy to gain a global understanding of the glycosyl hydrolases (GHs) produced by this anaerobic fungus. Results: We have developed an efficient platform that uses a combination of transcriptomic and proteomic approaches to N. patriciarum to accelerate gene identification, enzyme classification and application in rice straw degradation. By conducting complementary studies of transcriptome (Roche 454 GS and Illumina GA IIx) and secretome (ESI-Trap LC-MS/MS), we identified 219 putative GH contigs and classified them into 25 GH families. The secretome analysis identified four major enzymes involved in rice straw degradation: beta-glucosidase, endo-1,4-beta-xylanase, xylanase B and Cel48A exoglucanase. From the sequences of assembled contigs, we cloned 19 putative cellulase genes, including the GH1, GH3, GH5, GH6, GH9, GH18, GH43 and GH48 gene families, which were highly expressed in N. patriciarum cultures grown on different feedstocks. Conclusions: These GH genes were expressed in Pichia pastoris and/or Saccharomyces cerevisiae for functional characterization. At least five novel cellulases displayed cellulytic activity for glucose production. One beta-glucosidase (W5-16143) and one exocellulase (W5-CAT26) showed strong activities and could potentially be developed into commercial enzymes.
ISSN: 1754-6834
DOI: 10.1186/1754-6834-4-24
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